Peer-Reviewed Publications

      From transcriptomics to predictive toxicology - The systems toxicology computational challenge

      Poussin, C.; Belcastro, V.; Hoeng, J.
      Jul 29, 2016

      Exposure to external toxicants (cigarette smoke, pollutants, pesticides etc.) can induce significant molecular changes in human blood. Given that blood is easily accessible, it would be advantageous to identify specific markers in blood cells that could predict whether an individual had been exposed to a given toxicant. Such knowledge would have valuable implications for the toxicological risk-assessment of chemicals, drugs and consumer products, as well as for diagnostics. However, blood is a complex tissue to analyze, primarily due to the many different cell sub-populations it contains. Molecular changes brought about by exposure to a toxicant may involve a complex interplay of a sub-set of the chemicals present in the toxicant itself, molecules produced by the exposed organ (e.g., the lungs or the gut), and chemical-derived metabolites. Furthermore, the real-world application of models based on blood markers for predictive classification of individuals is uniquely challenging. The difficulty resides in the identification of relevant markers in blood after chemical exposure, the low success of correct classification when predictive models are applied on new individual blood samples, and the translation of these techniques into practical ready-to-use tools. In addition, most pre-clinical toxicological in vivo studies are conducted in rodents, adding a degree of complexity when applying the results to humans.